2025 "protein language models" Papers

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Concept Bottleneck Language Models For Protein Design

Aya Ismail, Tuomas Oikarinen, Amy Wang et al.

ICLR 2025posterarXiv:2411.06090
13
citations

Distilling Structural Representations into Protein Sequence Models

Jeffrey Ouyang-Zhang, Chengyue Gong, Yue Zhao et al.

ICLR 2025poster
8
citations

Evolutionary Reasoning Does Not Arise in Standard Usage of Protein Language Models

Yasha Ektefaie, Andrew Shen, Lavik Jain et al.

NeurIPS 2025poster

Learning to engineer protein flexibility

Petr Kouba, Joan Planas-Iglesias, Jiri Damborsky et al.

ICLR 2025posterarXiv:2412.18275
4
citations

PRING: Rethinking Protein-Protein Interaction Prediction from Pairs to Graphs

Xinzhe Zheng, Hao Du, Fanding Xu et al.

NeurIPS 2025posterarXiv:2507.05101
2
citations

Steering Masked Discrete Diffusion Models via Discrete Denoising Posterior Prediction

Jarrid Rector-Brooks, Mohsin Hasan, Zhangzhi Peng et al.

ICLR 2025posterarXiv:2410.08134
23
citations