"drug discovery" Papers
19 papers found
AANet: Virtual Screening under Structural Uncertainty via Alignment and Aggregation
Wenyu Zhu, Jianhui Wang, Bowen Gao et al.
Automatic Auxiliary Task Selection and Adaptive Weighting Boost Molecular Property Prediction
Zhiqiang Zhong, Davide Mottin
ChemAgent: Self-updating Memories in Large Language Models Improves Chemical Reasoning
Xiangru Tang, Tianyu Hu, Muyang Ye et al.
DecoyDB: A Dataset for Graph Contrastive Learning in Protein-Ligand Binding Affinity Prediction
Yupu Zhang, Zelin Xu, Tingsong Xiao et al.
Efficient Biological Data Acquisition through Inference Set Design
Ihor Neporozhnii, Julien Roy, Emmanuel Bengio et al.
Integrating Protein Dynamics into Structure-Based Drug Design via Full-Atom Stochastic Flows
Xiangxin Zhou, Yi Xiao, Haowei Lin et al.
MAGNet: Motif-Agnostic Generation of Molecules from Scaffolds
Leon Hetzel, Johanna Sommer, Bastian Rieck et al.
OligoGym: Curated Datasets and Benchmarks for Oligonucleotide Drug Discovery
Rachapun Rotrattanadumrong, Carlo De Donno
PharmacoMatch: Efficient 3D Pharmacophore Screening via Neural Subgraph Matching
Daniel Rose, Oliver Wieder, Thomas Seidel et al.
Rethinking Graph Prompts: Unraveling the Power of Data Manipulation in Graph Neural Networks
Chenyi Zi, Bowen LIU, Xiangguo SUN et al.
Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
Leo Klarner, Tim G. J. Rudner, Garrett Morris et al.
Data-Efficient Molecular Generation with Hierarchical Textual Inversion
Seojin Kim, Jaehyun Nam, Sihyun Yu et al.
Entropy-Reinforced Planning with Large Language Models for Drug Discovery
Xuefeng Liu, Chih-chan Tien, Peng Ding et al.
Predicting Dose-Response Curves with Deep Neural Networks
Pedro A. Campana, Paul Prasse, Tobias Scheffer
Preference Optimization for Molecule Synthesis with Conditional Residual Energy-based Models
Songtao Liu, Hanjun Dai, Yue Zhao et al.
Projecting Molecules into Synthesizable Chemical Spaces
Shitong Luo, Wenhao Gao, Zuofan Wu et al.
PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction
Lirong Wu, Yufei Huang, Cheng Tan et al.
Quality-Weighted Vendi Scores And Their Application To Diverse Experimental Design
Quan Nguyen, Adji Bousso Dieng
Text-Guided Molecule Generation with Diffusion Language Model
Haisong Gong, Qiang Liu, Shu Wu et al.